Riding BART using the Translink card works easily and perfectly. I filmed this after taking my furlough adventure. A high definition version of the video is available.
If you want an easy to understand demonstration to "tag" your card to ride BART (some have complained of difficulty), watch this animation from BART that uses their EZ Rider card.
One minor flaw is that I exited the Daly City BART station and transferred to Muni's 28-19th Avenue bus line, but instead of giving me the free ride as agreed in their transfer policy, it charged me the $1.75 and is equivalent to the 25 cent off coupons you get for transferring to Muni between Balboa Park and Embarcadero.
But here's the funny part, Daly City BART's free Muni transfer is valid for only one ride and you don't get a paper transfer to ride a different line (if you use non-Translink media), thereby, I would pay an additional $2.00 to ride a second Muni bus. Since I was charged $1.75 in error, it gave me the 90 minute transfer to take a second bus, and I saved a quarter in the end.
Translink customer service told me that transferring from Daly City BART to Muni gives "two free rides," which is the equivalent of the two-part Daly City BART-Muni transfer. I'm not 100% sure if they mean I get two rides without a 90 minute transfer each, or I don't get one.